The Journal of Eukaryotic Microbiology publishes original research on protists, including lower algae and fungi. Articles are published covering all aspects of these organisms, including their behavior, biochemistry, cell biology, chemotherapy, development, ecology, evolution, genetics, molecular biology, morphogenetics, parasitology, systematics, and ultrastructure.

真核微生物學雜志發表了對原生生物的原始研究，包括低等藻類和真菌。發表的文章涵蓋了這些生物體的所有方面，包括它們的行為、生物化學、細胞生物學、化療、發育、生態學、進化、遺傳學、分子生物學、形態遺傳學、寄生蟲學、系統學和超微結構。